]>
PMI Toolbox Documentation
Toolbox Documentation—Table
of Contents
- Overview of PMI Toolbox
- License
- The SD Structure
- The Measurement List
- The Medium Structure
- Toolbox Functions
- pmipath - setup
search paths for toolbox
- Data Processing Tools
- Working with PMI formatted data files,
readPMIData, writePMIData
- Fitting background optical properties,
fitMua, fitMusp
- Simultaneous background optical property fitting,
fitBackground,
newFitBackground
- Calibrating forward models to data,
fitSD, fitSDAmp, fitSDPhs
- Computing the Forward Problem
- Born Approximation (includes Rytov and FullBorn)
- Calculate the unperturbed fluence,
DPDWHelmholtz
- Calculate the Born forward matrix,
genBornMat
- Calculate the total fluence,
genBornData
- Frequency-Domain Imaging,
FD2pt and FD3pt
- Time-Domain Imaging,
TD2pt and TD3pt
- Analytical Sphere Solution
- Calculate total fluence given a spherical perturbation,
genSphereData
- Calculate fluence scattered off of spherical perturbations,
exactSphere
- tMCimg and tFDimg
- PMItoFD, PMItoMC
- MCConfig
- loadMC2pt
- readMCHis
- readSig
- Calculating Jacobians
- Adding Simulated Noise,
addElecNoise, addShotNoise
- Data Reconstruction
- Tikhonov Reconstruction
- Filtered Back-projection
- Regularized Least-squares
- Truncated Conjugate Gradient
- Algebraic Reconstruction Technique
- Simultaneous Iterative
Reconstruction Technique
- Truncated Singular
Value Decomposition
- Data Visualization
- 2-D data visualization,
plotData, showImage
- 3-D data visualization,
showVolume, ishowVolume
- Useful Utility Routines
- isFD, isTD
- SetOptode
- calcAffine
- calcSep
- genMeasList
- cm256, gray256
- mergeSD
- sampleVolume
- Sample Programs
- Additional programming notes
for developers and users writing their own PMI toolbox based
applications.