Year Title Author(s) Journal URL
2014

MRI upsampling using feature-based nonlocal means approach.

Jafari-Khouzani K. IEEE Trans Med Imaging. /pubmed/24951680
2014

Impact of MRI head placement on glioma response assessment.

Reuter M, Gerstner ER, Rapalino O, Batchelor TT, Rosen B, Fischl B. J Neurooncol /pubmed/24566765
2014

Probabilistic atlas-based segmentation of combined T1-weighted and DUTE MRI for calculation of head attenuation maps in integrated PET/MRI scanners.

Poynton CB, Chen KT, Chonde DB, Izquierdo-Garcia D, Gollub RL, Gerstner ER, Batchelor TT, Catana C. Am J Nucl Med Mol Imaging /pubmed/24753982
2014

Vessel caliber--a potential MRI biomarker of tumour response in clinical trials.

Emblem KE, Farrar CT, Gerstner ER, Batchelor TT, Borra RJ, Rosen BR, Sorensen AG, Jain RK. Nat Rev Clin Oncol /pubmed/25113840
2014

Phase 2 study of bosutinib, a Src inhibitor, in adults with recurrent glioblastoma.

Taylor JW, Dietrich J, Gerstner ER, Norden AD, Rinne ML, Cahill DP, Stemmer-Rachamimov A, Wen PY, Betensky RA, Giorgio DH, Snodgrass K, Randall AE, Batchelor TT, Chi AS. J Neurooncol /pubmed/25411098
2014

Quality Assurance Assessment of Diagnostic and Radiation Therapy-Simulation CT Image Registration for Head and Neck Radiation Therapy: Anatomic Region of Interest-based Comparison of Rigid and Deformable Algorithms.

Mohamed AS, Ruangskul MN, Awan MJ, Baron CA, Kalpathy-Cramer J, Castillo R, Castillo E, Guerrero TM, Kocak-Uzel E, Yang J, Court LE, Kantor ME, Gunn GB, Colen RR, Frank SJ, Garden AS, Rosenthal DI, Fuller CD. Radiology /pubmed/25380454
2014

Auto-segmentation of the brachial plexus assessed with TaCTICS - A software platform for rapid multiple-metric quantitative evaluation of contours.

Awan M, Dyer BA, Kalpathy-Cramer J, Bongers E, Dahele M, Yang J, Walker GV, Thaker NG, Holliday E, Bishop AJ, Thomas CR Jr, Rosenthal DI, Fuller CD. Acta Oncol /pubmed/25279958
2014

Advanced magnetic resonance imaging of the physical processes in human glioblastoma.

Kalpathy-Cramer J, Gerstner ER, Emblem KE, Andronesi OC, Rosen B. Cancer Res /pubmed/25183787
2014 Quantitative imaging biomarkers: A review of statistical methods for computer algorithm comparisons Obuchowski NA, Reeves AP, Huang EP, Wang XF, Buckler AJ, Kim HJ, Barnhart HX, Jackson EF, Giger ML, Pennello G, Toledano AY, Kalpathy-Cramer J, Apanasovich TV, Kinahan PE, Myers KJ, Goldgof DB, Barboriak DP, Gillies RJ, Schwartz LH, Sullivan AD; (for the Algorithm Comparison Working Group) Stat Methods Med Res /pubmed/24919829
2014 Statistical issues in the comparison of quantitative imaging biomarker algorithms using pulmonary nodule volume as an example Obuchowski NA, Barnhart HX, Buckler AJ, Pennello G, Wang XF, Kalpathy-Cramer J, Kim HJ, Reeves AP; for the Case Example Working Group Stat Methods Med Res /pubmed/24919828
2014 Web based tools for visualizing imaging data and development of XNATView, a zero footprint image viewer Gutman DA, Dunn WD, Cobb J, Stoner RM , Kalpathy-Cramer J, Erickson B Frontiers in Neuroinformatics /pubmed/24904399
2014 Variations of dynamic contrast-enhanced magnetic resonance imaging in evaluation of breast cancer therapy response: a multicenter data analysis challenge. Huang W, Li X, Chen Y, Li X, Chang MC, Oborski MJ, Malyarenko DI, Muzi M, Jajamovich GH, Fedorov A, Tudorica A, Gupta SN, Laymon CM, Marro KI, Dyvorne HA, Miller JV, Barbodiak DP, Chenevert TL, Yankeelov TE, Mountz JM, Kinahan PE, Kikinis R, Taouli B, Fennessy F, Kalpathy-Cramer J. Transl Oncol.  /pubmed/24772219
2014 Quantitative Imaging Network: Data Sharing and Competitive AlgorithmValidation Leveraging The Cancer Imaging Archive. Kalpathy-Cramer J, Freymann JB, Kirby JS, Kinahan PE, Prior FW. Transl Oncol.  /pubmed/24772218
2014 Development of a Software for Quantitative Evaluation Radiotherapy Target and Organ-at-Risk Segmentation Comparison. Kalpathy-Cramer J, Awan M, Bedrick S, Rasch CR, Rosenthal DI, Fuller CD. Journal of Digital Imaging /pubmed/24043593
2014 Low incidence of pseudoprogression by imaging in newly diagnosed glioblastoma patients treated with cediranib in combination with chemoradiation. Pinho MC, Polaskova P, Kalpathy-Cramer J, Jennings D, Emblem KE, Jain RK, Rosen BR, Wen PY, Sorensen AG, Batchelor TT, Gerstner ER. Oncologist /pubmed/24309981
2014 Impact of MRI head placement on glioma response assessment. Reuter M, Gerstner ER, Rapalino O, Batchelor TT, Rosen B, Fischl B. Journal of Neuro-oncology /pubmed/24566765
2014 Comparison of vertebral bone marrow fat assessed by (1)H MRS and inphase and out-of-phase MRI among family members. Ojanen X, Borra RJ, Havu M, Cheng SM, Parkkola R, Nuutila P, Alen M, Cheng S. Osteoporos Int.  2014 /pubmed/23943163
2013

Multicenter phase 1 trial of intraventricular immunochemotherapy in recurrent CNS lymphoma.

Rubenstein JL, Li J, Chen L, Advani R, Drappatz J, Gerstner E, Batchelor T, Krouwer H, Hwang J, Auerback G, Kadoch C, Lowell C, Munster P, Cha S, Shuman MA, Damon LE. Blood /pubmed/23197589
2013

Detection of oncogenic IDH1 mutations using magnetic resonance spectroscopy of 2-hydroxyglutarate.

Andronesi OC, Rapalino O, Gerstner E, Chi A, Batchelor TT, Cahill DP, Sorensen AG, Rosen BR. J Clin Invest /pubmed/23999439
2013 Increase in tumor-associated macrophages after antiangiogenic therapy is associated with poor survival among patients with recurrent glioblastoma. Lu-Emerson C, Snuderl M, Kirkpatrick ND, Goveia J, Davidson C, Huang Y, Riedemann L, Taylor J, Ivy P, Duda DG, Ancukiewicz M, Plotkin SR, Chi AS, Gerstner ER, Eichler AF, Dietrich J, Stemmer-Rachamimov AO, Batchelor TT, Jain RK. Neuro-Oncology /pubmed/23828240
2013 Anti-angiogenic therapy in high-grade glioma (treatment and toxicity) Taylor J, Gerstner ER Current Treatment Options in Neurology /pubmed/23417315
2013 Developing a Survey to Assess Factors that Contribute to Physician Involvement in Clinical Research. Taliercio V, Logan JR, Kalpathy-Cramer J, Oteroa P. Studies in Health Technology and Informatics /pubmed/23920525
2013 Prospective Assessment of an Atlas-Based Intervention Combined With Real-Time Software Feedback in Contouring Lymph Node Levels and Organs-at-Risk in the Head and Neck: Quantitative Assessment of Conformance to Expert Delineation. Awan M, Kalpathy-Cramer J, Gunn GB, Beadle BM, Garden AS, Phan J, Holliday E,  Jones WE 3rd, Maani E, Patel A, Choi J, Clyburn V, Tantiwongkosi B, Rosenthal DI, Fuller CD. Practical Radiation Oncology /pubmed/23853674
2013 Plus disease diagnosis in retinopathy of prematurity: vascular tortuosity as a function of distance from optic disk. Keck KM, Kalpathy-Cramer J, Ataer-Cansizoglu E, You S, Erdogmus D, Chiang MF.  Retina /pubmed/23538582
2013 Improved tumor oxygenation and survival in glioblastoma patients who show increased blood perfusion after cediranib and chemoradiation. Batchelor TT, Gerstner ER, Emblem KE, Duda DG, Kalpathy-Cramer J, Snuderl M, Ancukiewicz M, Polaskova P, Pinho MC, Jennings D, Plotkin SR, Chi AS, Eichler AF, Dietrich J, Hochberg FH, Lu-Emerson C, Iafrate AJ, Ivy SP, Rosen BR, Loeffler JS, Wen PY, Sorensen AG, et al. Proceedings of the National Academy of Science /pubmed/24190997
2013 Slice accelerated gradient-echo spin-echo dynamic susceptibility contrast imaging with blipped CAIPI for increased slice coverage. Eichner C, Jafari-Khouzani K, Cauley S, Bhat H, Polaskova P, Andronesi OC, Rapalino O, Turner R, Wald LL, Stufflebeam S, Setsompop K. Magn Reson Med.  2013 /pubmed/24285593
2013 Influence of bone marrow composition on measurements of trabecular microstructure using decay due to diffusion in the internal field MRI: Simulations and clinical studies. Sprinkhuizen SM, Ackerman JL, Song YQ. Magn Reson Med.  2013 /pubmed/24382681
2013 Vessel architectural imaging identifies cancer patient responders to anti-angiogenic therapy. Emblem KE, Mouridsen K, Bjornerud A, Farrar CT, Jennings D, Borra RJ, Wen PY, Ivy P, Batchelor TT, Rosen BR, Jain RK, Sorensen AG. Nat Med.  2013 /pubmed/23955713
2012 Promise and pitfalls of quantitative imaging in oncology clinical trials. Kurland BF, Gerstner ER, Mountz JM, Schwartz LH, Ryan CW, Graham MM, Buatti JM, Fennessy FM, Eikman EA, Kumar V, Forster KM, Wahl RL, Lieberman FS. Magnetic Resonance Imaging /pubmed/22898682
2012 Antiangiogenic therapy for glioblastoma. Gerstner ER, Batchelor TT. Journal of Cancer /pubmed/22290257
2012 3D Slicer as an image computing platform for the Quantitative Imaging Network. Fedorov A, Beichel R, Kalpathy-Cramer J, Finet J, Fillion-Robin JC, Pujol S, Bauer C, Jennings D, Fennessy F, Sonka M, Buatti J, Aylward S, Miller JV, Pieper S, Kikinis R. Magnetic Resonance Imaging /pubmed/22770690
2012 Accurate determination of imaging modality using an ensemble of text- and image-based classifiers. Kahn CE Jr, Kalpathy-Cramer J, Lam CA, Eldredge CE. Journal of Digital Imaging /pubmed/21748413
2012 MRI tracking of FePro labeled fresh and cryopreserved long term in vitro expanded human cord blood AC133+ endothelial progenitor cells in rat glioma. Janic B, Jafari-Khouzani K, Babajani-Feremi A, Iskander AS, Varma NR, Ali MM, Knight RA, Arbab AS. PLoS One.  2012 /pubmed/22662174
2012 Prediction of glioblastoma multiform response to bevacizumab treatment using multi-parametric MRI. Najafi M, Soltanian-Zadeh H, Jafari-Khouzani K, Scarpace L, Mikkelsen T. PLoS One.  2012 /pubmed/22253835
2012 Temperature dependence of the magnetic volume susceptibility of human breast fat tissue: an NMR study. Sprinkhuizen SM, Bakker CJ, Ippel JH, Boelens R, Viergever MA, Bartels LW. MAGMA.  2012 /pubmed/21484477
2011 Diffusion and diffusion tensor imaging in brain cancer. Gerstner ER, Sorensen AG. Seminars in Radiation Oncology /pubmed/21356481
2011 Phase I trial with biomarker studies of vatalanib (PTK787) in patients with newly diagnosed glioblastoma treated with enzyme inducing anti-epileptic drugs and standard radiation and temozolomide. Gerstner ER, Eichler AF, Plotkin SR, Drappatz J, Doyle CL, Xu L, Duda DG, Wen  PY, Jain RK, Batchelor TT. Journal of Neuro-oncology /pubmed/20821342
2011 Nomogram for predicting the benefit of adjuvant chemoradiotherapy for resected gallbladder cancer. Wang SJ, Lemieux A, Kalpathy-Cramer J, Ord CB, Walker GV, Fuller CD, Kim JS, Thomas CR Jr. Journal of Clinical Oncology /pubmed/22067404
2011 Individualized estimation of conditional survival for patients with head and neck cancer. Wang SJ, Wissel AR, Ord CB, Kalpathy-Cramer J, Fuller CD, Holland JM, Gross ND. Otolaryngology Head Neck Surgery /pubmed/21493289
2011 An interactive tool for individualized estimation of conditional survival in rectal cancer. Wang SJ, Wissel AR, Luh JY, Fuller CD, Kalpathy-Cramer J, Thomas CR Jr. Annals of Surgical Oncology /pubmed/21207162
2011 A pilot prospective feasibility study of organ-at-risk definition using Target Contour Testing/Instructional Computer Software (TaCTICS), a training and evaluation platform for radiotherapy target delineation. Kalpathy-Cramer J, Bedrick SD, Boccia K, Fuller CD. AMIA Annual Symposium Proceedings /pubmed/22195121
2011 Principal curve based semi-automatic segmentation of organs in 3D-CT. You S, Bas E, Ataer-Cansizoglu E, Kalpathy-Cramer J, Erdogmus D. Conference Proceedings IEEE Engineering in Medicine and Biology /pubmed/22255760
2011 Sporadic primary malignant intracerebral nerve sheath tumors: case report and literature review. Barnard ZR, Agarwalla PK, Jeyaretna DS, Farrell CJ, Gerstner ER, Tian D, Curry WT Jr. Journal of Neuro-oncology /pubmed/21327709
2011 Hippocampal volumetry for lateralization of temporal lobe epilepsy: automated versus manual methods. Akhondi-Asl A, Jafari-Khouzani K, Elisevich K, Soltanian-Zadeh H. Neuroimage.  2011 /pubmed/20353827
2011 Incidental findings in brain MRI research: what do we owe our subjects? Borra RJ, Sorensen AG. J Am Coll Radiol.  2011 /pubmed/22137002
2011 T(1)- and T(2)(*)-dominant extravasation correction in DSC-MRI: part II-predicting patient outcome after a single dose of cediranib in recurrent glioblastoma patients. Emblem KE, Bjornerud A, Mouridsen K, Borra RJ, Batchelor TT, Jain RK, Sorensen AG. J Cereb Blood Flow Metab.  2011 /pubmed/21505476
2011 Voxelwise analysis of diffusion tensor imaging and structural MR imaging in patients with the m.3243A>G mutation in mitochondrial DNA. Virtanen SM, Lindroos MM, Majamaa K, Nuutila P, Borra RJ, Parkkola R. AJNR Am J Neuroradiol.  2011 /pubmed/21233230
2010 Imaging and response criteria in gliomas. Gerstner ER, Batchelor TT. Current Opinions in Oncology /pubmed/20689430
2010 Infiltrative  patterns of glioblastoma spread detected via diffusion MRI after treatment with cediranib. Gerstner ER, Chen PJ, Wen PY, Jain RK, Batchelor TT, Sorensen G. Neuro-Oncology /pubmed/20406897
2010 Primary central nervous system lymphoma Gerstner ER, Batchelor TT. Archives of Neurology /pubmed/20212226
2010 Diffusion magnetic resonance imaging detects pathologically confirmed, nonenhancing tumor progression in a patient with recurrent glioblastoma receiving bevacizumab. Gerstner ER, Frosch MP, Batchelor TT. Journal of Clinical Oncology /pubmed/19933906
2010 Parametric survival models for predicting the benefit of adjuvant chemoradiotherapy in gallbladder cancer. Wang SJ, Kalpathy-Cramer J, Kim JS, Fuller CD, Thomas CR. AMIA Annual Symposium Proceedings /pubmed/21347098
2010 Target Contour Testing/Instructional Computer Software (TaCTICS): A Novel Training and Evaluation Platform for Radiotherapy Target Delineation. Kalpathy-Cramer J, Fuller CD. AMIA Annual Symposium Proceedings /pubmed/21347001
2010 FLAIR signal and texture analysis for lateralizing mesial temporal lobe epilepsy. Jafari-Khouzani K, Elisevich K, Patel S, Smith B, Soltanian-Zadeh H. Neuroimage.  2010 /pubmed/19744564
2010 Temperature-induced tissue susceptibility changes lead to significant temperature errors in PRFS-based MR thermometry during thermal interventions. Sprinkhuizen SM, Konings MK, van der Bom MJ, Viergever MA, Bakker CJ, Bartels LW. Magn Reson Med.  2010 /pubmed/20648685
2010 Absolute MR thermometry using time-domain analysis of multi-gradient-echo magnitude images. Sprinkhuizen SM, Bakker CJ, Bartels LW. Magn Reson Med.  2010 /pubmed/20577981
2009 Anti-vascular endothelial growth factor therapy for malignant glioma. Gerstner ER, Sorensen AG, Jain RK, Batchelor TT. Current Neurological Neuroscience /pubmed/19348715
2009 VEGF inhibitors in the treatment of cerebral edema in patients with brain cancer. Gerstner ER, Duda DG, di Tomaso E, Ryg PA, Loeffler JS, Sorensen AG, Ivy P, Jain RK, Batchelor TT. Nature Reviews Clinical Oncology /pubmed/19333229
2009 Effect of adding temozolomide to radiation therapy on the incidence of pseudo-progression. Gerstner ER, McNamara MB, Norden AD, Lafrankie D, Wen PY. Journal of Neuro-oncology /pubmed/19221865
2009 Mgmt methylation is a prognostic biomarker in elderly patients with newly diagnosed glioblastoma. Gerstner ER, Yip S, Wang DL, Louis DN, Iafrate AJ, Batchelor TT. Neurology /pubmed/19884580
2009 High-dose methotrexate for elderly patients with primary CNS lymphoma. Zhu JJ, Gerstner ER, Engler DA, Mrugala MM, Nugent W, Nierenberg K, Hochberg FH, Betensky RA, Batchelor TT. Journal of Neuro-oncology /pubmed/18757775
2009 Do respiration and cardiac motion induce magnetic field fluctuations in the breast and are there implications for MR thermometry? Peters NH, Bartels LW, Sprinkhuizen SM, Vincken KL, Bakker CJ. J Magn Reson Imaging.  2009 /pubmed/19243069
2009 Three-dimensional spatial and temporal temperature control with MR thermometry-guided focused ultrasound (MRgHIFU). Mougenot C, Quesson B, de Senneville BD, de Oliveira PL, Sprinkhuizen S, Palussière J, Grenier N, Moonen CT. Magn Reson Med.  2009 /pubmed/19097249
2009 Aortic pulsatile distention in young healthy volunteers is asymmetric: analysis with ECG-gated MRI. van Prehn J, Vincken KL, Sprinkhuizen SM, Viergever MA, van Keulen JW, van Herwaarden JA, Moll FL, Bartels LW. Eur J Vasc Endovasc Surg.  2009 /pubmed/19046649
2009 A prospective diagnostic accuracy study of 18F-fluorodeoxyglucose positron emission tomography/computed tomography, multidetector row computed tomography, and magnetic resonance imaging in primary diagnosis and staging of pancreatic cancer. Kauhanen SP, Komar G, Seppänen MP, Dean KI, Minn HR, Kajander SA, Rinta-Kiikka I, Alanen K, Borra RJ, Puolakkainen PA, Nuutila P, Ovaska JT. Ann Surg.  2009 /pubmed/19687736