SOFTWARE AND DATA PROCESSING

Martinos Center Software Packages for Data Processing

The Freesurfer package is tools for segmentation, surface reconstruction and processing of surface models of the human cerebral cortex. It includes FS-Fast fMRI data analysis tools.

HomER (Hemodynamic Evoked Response) graphical interface for visualization and analysis of Near Infra-Red Spectroscopy (NIRS) data

The JIP toolkit provides an analysis stream that has been optimized for preclinical data. Packages are provided for display, alignment to standardized spaces, and GLM analyses for fMRI and PET.

Minimum Norm Estimates software for MEG source modeling.

Photon Migration Imaging (PMI) Toolbox for solving diffuse optical imaging (DOI) forward and inverse problems

Wavelet Regularized Spatiotemporal Analysis Toolbox for single subject fMRI

Related Software Packages

For Software Users

 

Major funding for software development at the Martinos Center comes from the National Center for Research Resources (NCRR) .

 

 

 

 

 

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