Methodological papers related to the MNE Software

General MEG reviews

M. Hämäläinen, R. Hari, R. Ilmoniemi, J. Knuutila, and O. V. Lounasmaa, "Magnetoencephalography - theory, instrumentation, and applications to noninvasive studies of the working human brain," Reviews of Modern Physics, vol. 65, pp. 413-497, 1993.

S. Baillet, J. C. Mosher, and R. M. Leahy, "Electromagnetic Brain Mapping," IEEE Signal Processing Magazine, vol. 18, pp. 14 - 30, 2001.

M. Hämäläinen and R. Hari, "Magnetoencephalographic Characterization of Dynamic Brain Activation: Basic Principles and Methods of Data Collection and Source Analysis," in Brain mapping : the methods, A. W. Toga and J. C. Mazziotta, Eds. Amsterdam ; Boston: Academic Press, 2002.

Cortical surface reconstruction and morphing

A. M. Dale, B. Fischl, and M. I. Sereno, "Cortical surface-based analysis. I. Segmentation and surface reconstruction," Neuroimage, vol. 9, pp. 179-94., 1999.

B. Fischl, M. I. Sereno, and A. M. Dale, "Cortical surface-based analysis. II: Inflation, flattening, and a surface-based coordinate system," Neuroimage, vol. 9, pp. 195-207., 1999.

B. Fischl, M. I. Sereno, R. B. Tootell, and A. M. Dale, "High-resolution intersubject averaging and a coordinate system for the cortical surface," Hum Brain Mapp, vol. 8, pp. 272-84, 1999.

Forward modelling

M. S. Hämäläinen and J. Sarvas, "Realistic conductivity geometry model of the human head for interpretation of neuromagnetic data," IEEE Trans. Biomed. Eng., vol. BME-36, pp. 165-171, 1989.

B. Fischl, D. H. Salat, A. J. van der Kouwe, N. Makris, F. Segonne, B. T. Quinn, and A. M. Dale, "Sequence-independent segmentation of magnetic resonance images," Neuroimage, vol. 23 Suppl 1, pp. S69-84, 2004.

J. Jovicich, S. Czanner, D. Greve, E. Haley, A. van der Kouwe, R. Gollub, D. Kennedy, F. Schmitt, G. Brown, J. Macfall, B. Fischl, and A. Dale, "Reliability in multi-site structural MRI studies: effects of gradient non-linearity correction on phantom and human data," Neuroimage, vol. 30, pp. 436-43, 2006.

J. C. Mosher, R. M. Leahy, and P. S. Lewis, "EEG and MEG: forward solutions for inverse methods," IEEE Trans Biomed Eng, vol. 46, pp. 245-59, 1999.

Signal-space projections

C. D. Tesche, M. A. Uusitalo, R. J. Ilmoniemi, M. Huotilainen, M. Kajola, and O. Salonen, "Signal-space projections of MEG data characterize both distributed and well-localized neuronal sources," Electroencephalogr Clin Neurophysiol, vol. 95, pp. 189-200, 1995.

M. A. Uusitalo and R. J. Ilmoniemi, "Signal-space projection method for separating MEG or EEG into components," Med Biol Eng Comput, vol. 35, pp. 135-40, 1997.

Minimum-norm estimates

M. Hämäläinen and R. Ilmoniemi, "Interpreting magnetic fields of the brain: minimum norm estimates," Helsinki University of Technology, Espoo TKK-F-A559, 1984.

A. Dale and M. Sereno, "Improved localization of cortical activity by combining EEG and MEG with MRI cortical surface reconstruction: A linear approach," J. Cog. Neurosci, vol. 5, pp. 162-176, 1993.

M. S. Hämäläinen and R. J. Ilmoniemi, "Interpreting magnetic fields of the brain: minimum norm estimates," Med Biol Eng Comput, vol. 32, pp. 35-42., 1994.

A. M. Dale, A. K. Liu, B. R. Fischl, R. L. Buckner, J. W. Belliveau, J. D. Lewine, and E. Halgren, "Dynamic statistical parametric mapping: combining fMRI and MEG for high-resolution imaging of cortical activity," Neuron, vol. 26, pp. 55-67, 2000.

A. K. Liu, A. M. Dale, and J. W. Belliveau, "Monte Carlo simulation studies of EEG and MEG localization accuracy," Hum Brain Mapp, vol. 16, pp. 47-62, 2002.

F. H. Lin, J. W. Belliveau, A. M. Dale, and M. S. Hamalainen, "Distributed current estimates using cortical orientation constraints," Hum Brain Mapp, 2005.

fMRI-weighted estimates

A. M. Dale, A. K. Liu, B. R. Fischl, R. L. Buckner, J. W. Belliveau, J. D. Lewine, and E. Halgren, "Dynamic statistical parametric mapping: combining fMRI and MEG for high-resolution imaging of cortical activity," Neuron, vol. 26, pp. 55-67, 2000.

A. K. Liu, J. W. Belliveau, and A. M. Dale, "Spatiotemporal imaging of human brain activity using functional MRI constrained magnetoencephalography data: Monte Carlo simulations," Proc Natl Acad Sci U S A, vol. 95, pp. 8945-50., 1998.

F. H. Lin, T. Witzel, M. S. Hamalainen, A. M. Dale, J. W. Belliveau, and S. M. Stufflebeam, "Spectral spatiotemporal imaging of cortical oscillations and interactions in the human brain," Neuroimage, vol. 23, pp. 582-95, 2004.

List compiled by Matti Hämäläinen February 2007