Software

Functional and Structural MRI

  • FreeSurfer
  • AFNI
  • FSL
  • MRIcro

    Diffusion MRI

  • MRI Studio
  • TrackVis

    MEG

  • MNE
  • MEGSIM
  • Brainstorm

    NIRS

  • Mesh-based Monte Carlo (MMC)
  • NFRI functions for EEG electrode/optode placement
  • Homer (matlab scripts for fNIRS analysis)

    Vascular Segmentation

  • VMTK (Vascular Modeling Tool Kit)
  • Frangi Vesselness Filter (MATLAB implementation)
  • BioImage Suite

    Meshing

  • iso2mesh MATLAB toolbox
  • MeshLab

    Stimulus Presentation

  • Psychtoolbox

    Help Lists

  • Martinos-tech
  • Freesurfer List
  • meg-analysis

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