Help

DISCLAIMER:
This page is not guaranteed to be up-to-date and is worth what you paid for it. Internal programs may change at the will of the programmer.

Basic UNIX commands

Don't forget to check out the other helpful information found on his top page.

Jaz Info

• sudo new_jaz 1
  formats new jaz platter
• mount_jaz 1
  mounts formatted jaz platter, cd /jaz1/users to use
• unmount_jaz 1
  unmounts jaz platter...ready to eject
• ~ona/bin/misc/checkjaz
  hacky script that checks to see if any processes using jaz platter, and if so prints them out (combination of fuser -c /jaz1 and ps -aux)

CD Info

Warning: Please make sure no other process, especially autobak, is running before you attempt to write your data onto CD.

• Writing CDs
  Mike's documentation on how to write to CDs on qtv-cd
• ~ona/bin/backup/autocdburn <dir>
  Backs up contents of dir. dir must be absolute path name. Works only on qtv-cd
• ~ona/bin/backup/quikcdburn <dir>
  Backs up contents of dir. dir can be relative path name. Doesn't check for other processes or make labels. Use only if you're sure no one else is running any programs.

  The following scripts can be run to do the above command by hand:

  1. cdclean
     cleans /cd1/users. Double-check the directory to make sure it is empty since the command returns before it completes the job. Works only on qtv-cd
  2. cdprep <dir> -V <name>
     Makes /cd/users/cdimage. Works only on qtv-cd
  3. cdburn
     Burns contents of cdimage onto CD. Works only on qtv-cd.

• ~ona/bin/backup/dupcd
  Duplicate CD in first tray onto CD in second tray. Repeating cdburn will allow repeated burns on different CDs. Works only on qtv-cd.
• ~ona/bin/misc/checkcd
  hacky script that checks to see if any processes using your CD

Tape Info

Aliases

• tapeget <dir>
  gets dir directory/file off tape into current directory
• tapeput <dir>
  puts dir directory/file onto tape

Commands (for SunOS use /dev/rst0 instead)

• mt -f /dev/rmt/0mn rewind
  rewinds tape
• mt -f /dev/rmt/0mn rewoffl
  rewinds tape and ejects it
• mt -f /dev/rmt/0mn status
  finds status of tapedrive
• tar cvf /dev/rmt/0mn dir
  stores file/directory dir onto tape
• tar xvf /dev/rmt/0mn dir
  retrieve file/directory from tape
• tar tvf /dev/rmt/Omn
  lists files stored on tape
• ~aschang/bin/tapedrives
  checks status of tapedrives
• ~ona/bin/misc/duptape
  backs up data from tape on cbv to mtt

Image Stuff

• snapshot
  can be used to take .ras images of xds files and then converted to pict format
• rasttopict
  converts Sun ras images to more portable pict format
• ~ona/bin/rasttopictlist
  same as above but can be used with list of files

SPM

• ~ona/bin/misc/motioncorrect
  Motion corrects using Matlab 5.
  Make sure you have the following in your .cshrc_Solaris_2:
  setenv MATLABPATH ${MATLABPATH}:/space/gs/1/users/ona/spm96/sun
• /space/gs/1/users/ona/spm96/sun
  SPM96 on solaris, Matlab 5, SPM96 on SGI Matlab 4.2
• /homes/nmrnew/home/thomas/spm95
  SPM95 on sunos and SGI, Matlab 4.2
• ~ona/bin/convert/bsh2img
  creates Analyze .img files along with headers assuming stack of images
• ~ona/bin/spm/batch.m
  example SPM96 batch file; can run with matlab as
  matlab < batch.m >output.txt

Miscellaneous

• ~ona/bin/misc/airmotioncorrect
  motion corrects using AIR3.08
• Elementary Functional MRI Data Analysis
  Standard fMRI tools
• /space/qtvraid/1/homes/ona/gcc/bin/gcc
  gcc version 2.95.1 19990816 (release)
• /opt/AcroRead/bin/acroread
  PDF file reader
• /usr/local/bin/matlab5
  Matlab 5 on solaris OS
  If you are not familiar with Matlab, I have a brief introductory webpage.
• /space/gs/32/users/splus6.0/bin/Splus
  SPLUS

Last modified Sun Jan 17 21:41:18 EST 1999