Welcome to our Support Center
General Analysis Software
Martinos Center Software
Software Name | Last Updated | NMR Path | Maintainer | Instructions |
---|---|---|---|---|
AFNI | 5/22/2023 | /usr/pubsw/packages/AFNI | help@nmr | Installed version 23.1.05 |
ANTs | 1/21/2020 | /usr/pubsw/packages/ANTS | help@nmr | Installed version 2.3.4 |
ATPP_GUI | 6/7/2017 | /usr/pubsw/packages/ATPP | help@nmr | Installed version 2.1.0 |
BART Toolbox | 10/17/2017 | /usr/pubsw/packages/bart | help@nmr | Installed version 0.4.01 |
BASIL | 4/11/18 | /usr/pubsw/packages/oxford_asl | help@nmr | /usr/pubsw/packages/oxford_asl/README.txt |
Caffe | 11/25/2015 | /usr/pubsw/packages/caffe | help@nmr | |
DicomBrowser | 10/21/2015 | /usr/pubsw/bin/dicombrowser | gwarner | |
Docker | On select machines upon request | help@nmr | Docker @ Martinos | |
DSI Studio | 9/3/2021 | /usr/pubsw/packages/DSI-Studio | help@nmr | |
fMRIPrep | 10/10/2023 | /usr/pubsw/packages/fmriprep/ | help@nmr | Built Singularity version 23.1.4 |
Freesurfer | weekly | /usr/local/freesurfer | fsdev | http://www.freesurfer.net/fswiki/InternalFreeSurferDistributions |
FSL | 12/30/2020 | /usr/pubsw/packages/fsl | help@nmr | https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup |
FSLeyes | 1/7/2019 | /usr/pubsw/packages/FSLeyes | help@nmr | Installed version 0.27.0 |
heudiconv | 2/27/2020 | /usr/pubsw/packages/heudiconv | help@nmr | Latest Singularity build is heudiconv_0.8.0.sif |
ITK | 10/30/2014 | /usr/pubsw/packages/itk | http://itk.org/ITK/resources/resources.html | |
Mathematica | 7/20/15 | /usr/pubsw/bin/mathematica | help@nmr | |
Matlab | 4/10/2018 | /usr/pubsw/bin/matlab | help@nmr | |
Mendeley | 6/5/2018 | /usr/pubsw/bin/mendeleydesktop | help@nmr | Installed version 1.19 |
MRIcron | 3/19/2015 | /usr/pubsw/packages/MRIcron | ||
MRtrix3 | 5/11/2023 | /usr/pubsw/packages/mrtrix | help@nmr | |
occiput | 7/9/2015 | /usr/pubsw/packages/occiput | occiput@nmr | |
picasso | 10/27/16 | /usr/pubsw/packages/picasso | ||
PPI Toolbox | 4/11/2014 | /usr/pubsw/common/spm/spm8/toolbox/PPPI/ | mclaren | |
Python | see list | /usr/pubsw/packages/python | martinos-python | http://freesurfer.net/fswiki/DevelopersGuide/NMRCenterPython/UsersGuide |
R | 3/12/2024 | /usr/pubsw/packages/R | help@nmr | http://r-project.org (latest installed 4.3.3) |
Singularity | 1/22/2020 | /usr/bin/singularity | help@nmr | Singularity @ Martinos |
Slicer | 2/25/2019 | /usr/pubsw/packages/slicer/ | help@nmr | http://slicer.org/slicerWiki/index.php/Main_Page |
SlicerSALT | 8/1/2017 | /usr/pubsw/bin/SlicerSALT | help@nmr | http://salt.slicer.org/docs/ |
SPM | 2/21/2018 | /usr/pubsw/common/spm | aschultz | Installed version 7219 |
TORTOISE | 6/28/2017 | /usr/pubsw/packages/TORTOISE | mhibert | Installed version 3.0.0 |
Workbench | 6/28/2017 | /usr/pubsw/packages/workbench | help@nmr | Installed version 1.2.3 |
vtk | /usr/pubsw/packages/vtk | fsdev |