mne.bem.make_watershed_bem¶

mne.bem.make_watershed_bem(subject, subjects_dir=None, overwrite=False, volume=’T1’, atlas=False, gcaatlas=False, preflood=None, show=False, verbose=None)[source]¶

Create BEM surfaces using the FreeSurfer watershed algorithm.

Parameters:

Parameters:	subject : str Subject name (required) subjects_dir : str Directory containing subjects data. If None use the Freesurfer SUBJECTS_DIR environment variable. overwrite : bool Write over existing files volume : str Defaults to T1 atlas : bool Specify the –atlas option for mri_watershed gcaatlas : bool Use the subcortical atlas preflood : int Change the preflood height show : bool Show surfaces to visually inspect all three BEM surfaces (recommended). New in version 0.12. verbose : bool, str or None If not None, override default verbose level

subject : str

Subject name (required)

subjects_dir : str

Directory containing subjects data. If None use the Freesurfer SUBJECTS_DIR environment variable.

overwrite : bool

Write over existing files

volume : str

Defaults to T1

atlas : bool

Specify the –atlas option for mri_watershed

gcaatlas : bool

Use the subcortical atlas

preflood : int

Change the preflood height

show : bool

Show surfaces to visually inspect all three BEM surfaces (recommended).

New in version 0.12.

verbose : bool, str or None

If not None, override default verbose level

Notes

New in version 0.10.