jip-srtm (aka srtm) is designed as a unix/linux program that requires that all necessary files are specified on the unix line at startup. The general syntax is
srtm [GLM control file] [options]
This program has few startup options. In fact, currently the only startup options are -h and -H, which point to documentation files that have yet to be written.
Other input options
-h or -H Get help, either the short version (-h) or the long version (-H).
-v or -V Use verbose output.
For each condition specified in the GLM control file, there will be 3 output files:
- P-value maps P-condition.nii e.g., P-A.nii
- T statistic maps T-condition.nii e.g., T-1.nii
- Signal change maps S-condition.nii e.g., S-a.nii
- Binding potential maps BP-condition.nii e.g., BP-A.nii